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Ghanshyam is a PhD Candidate at ATCG Lab, in Department of Computational and Data Sciences at the IISc . His research involves the intersection of High-Performance Computing and Computational Biology . Explore my Image Gallery My Erdős number is 5 |
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[March 2024]
Our work on "Accelerating whole-genome alignment using parallel chaining algorithm" is accepted for short talk at [RECOMB-Seq 2024] |
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[February 2024]
Invited talk by IEEE on "Why Use Human Genome Graphs as a Reference? Insights into Scalable Genome Graph Algorithms." [Poster] [Memento] |
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[December 2023]
Our paper titled "Haplotype-aware Sequence-to-Graph Alignment" is accepted at RECOMB 2024. [Link] |
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[November 2023]
Preprint on "Haplotype-aware Sequence-to-Graph Alignment". [preprint] Minichain (v1.3) released with support for "Haplotype-aware Sequence-to-Graph Alignment". [Link] |
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[August 2023]
Received Intel Research Fellowship 2023-24. |
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[June 2023]
Our paper titled "Co-linear Chaining on General Graphs" is accepted at WABI 2023. |
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[May 2023]
Released, PanAligner: Long read mapper to a pangenome graph. Link. |
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[April 2023]
I gave a talk on Sequence to Graph Alignment using Gap-Sensitive Co-Linear Chaining at RECOMB 2023. I presented a poster titled "Minichain: A New Method for Pangenome Graph Construction" at RECOMB-SEQ 2023. I presented my research work on Pangenomes at the EECS 2023 Symposium. |
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[March 2023] Received RECOMB 2023 Travel Fellowship. Our poster titled "Minichain: A new method for pangenome graph construction" has been accepted at RECOMB-SEQ 2023. [Link] |
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[Feb 2023] Minichain v1.2 released. [Link] Minichain v1.1 released. [Link] |
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[Dec 2022] Presented a poster titled "Scaling sequence-to-DAG alignment with parameterized gap-sensitive co-linear chaining algorithms" at HiPC 2022. [Link] |
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[Nov 2022] A paper titled "Sequence to graph alignment using gap-sensitive co-linear chaining" is accepted at RECOMB 2023. [Link] |
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[Dec 2021] Winner: National HPC Hackthon 2021. [Link] |
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[Oct 2021] Benchmarking human whole genome and RNA sequencing using Nvidia Ampere A100 GPUs. [Link] |
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Haplotype-aware sequence alignment to pangenome graphs. [preprint] [code]
Ghanshyam Chandra, Daniel Gibney and Chirag Jain, (To appear in RECOMB 2024, To be published in Genome Research) |
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Co-linear Chaining on Pangenome Graphs [paper] [code]
Jyotshna Rajput, Ghanshyam Chandra and Chirag Jain, (Appeared in WABI 2023, Published in Algorithms for Molecular Biology) |
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Gap-Sensitive Colinear Chaining Algorithms for Acyclic Pangenome Graphs. [paper] [code]
Ghanshyam Chandra and Chirag Jain, (Appeared in RECOMB 2023, Published in Journal of Computational Biology) |
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Cloned from Jon Barron. |